Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

Configure this page

Export data

Share this page

Bookmark this page

.

Gene: ENSSSCG00000016330

.

Description

LRR binding FLII interacting protein 1 [Source:UniProtKB Gene Name;Acc:A0A286ZP61]

Location

Primary_assembly 15: 137,283,266-137,439,384 forward strand.

Sscrofa11.1:CM000826.5

About this gene

This gene has 9 transcripts (splice variants), 234 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000086952.2	-	4272	1082aa	ENSSSCP00000061068.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QS97	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSSSCT00000072415.2	-	4279	1067aa	ENSSSCP00000071507.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2R2T8	-
ENSSSCT00000040615.3	-	4051	991aa	ENSSSCP00000033269.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A286ZP61	-
ENSSSCT00000047141.3	-	4014	846aa	ENSSSCP00000037054.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A286ZZI6	-
ENSSSCT00000052224.3	-	3969	831aa	ENSSSCP00000056340.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287BIH9	-
ENSSSCT00000084072.2	-	3870	840aa	ENSSSCP00000066208.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QW94	-
ENSSSCT00000017783.5	-	2893	651aa	ENSSSCP00000017302.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D1EUA8 F1SJI5	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSSSCT00000017786.5	-	2722	639aa	ENSSSCP00000017305.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1T6E8 F1SJI2	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSSSCT00000030900.4	-	2689	640aa	ENSSSCP00000027755.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D1EWJ4 I3LUF5	-

.

Breeds

.

Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

.

Personal Data