Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: COL4A4 ENSSSCG00000016244

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Description

collagen type IV alpha 4 chain [Source:VGNC Symbol;Acc:VGNC:95980]

Location

Primary_assembly 15: 128,476,257-128,595,477 reverse strand.

Sscrofa11.1:CM000826.5

About this gene

This gene has 4 transcripts (splice variants), 175 orthologues and 36 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000052450.3	COL4A4-202	5625	1689aa	ENSSSCP00000049345.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287AZF2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSSSCT00000063167.3	COL4A4-203	4427	1289aa	ENSSSCP00000035827.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A286ZWF0	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSSSCT00000039391.3	COL4A4-204	4128	1192aa	ENSSSCP00000036534.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A286ZXV9	-
ENSSSCT00000094833.1	COL4A4-201	141	46aa	ENSSSCP00000074775.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8W4F900	-

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Breeds

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Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data