Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: MEF2C ENSSSCG00000014149

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Description

myocyte enhancer factor 2C [Source:VGNC Symbol;Acc:VGNC:90127]

Location

Primary_assembly 2: 96,124,168-96,296,810 reverse strand.

Sscrofa11.1:CM000813.5

About this gene

This gene has 4 transcripts (splice variants), 270 orthologues and 4 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000015454.4	MEF2C-204	4459	483aa	ENSSSCP00000015044.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D0P2W4 A0A8D1SC75	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSSSCT00000052217.3	MEF2C-201	4590	473aa	ENSSSCP00000055974.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D0ID56 A0A8D1J8B2	-
ENSSSCT00000045699.3	MEF2C-202	4583	431aa	ENSSSCP00000036399.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A480TEY7 A0A8D0U4W5	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSSSCT00000060135.3	MEF2C-203	4363	453aa	ENSSSCP00000037212.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287A0E3	-

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Breeds

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Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data