Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Breeds
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  - Orthologues
  - Paralogues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
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Pathway
Molecular interactions
Regulation
External references
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ID History
- Gene history

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Gene: USE1 ENSSSCG00000013875

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Description

unconventional SNARE in the ER 1 [Source:VGNC Symbol;Acc:VGNC:94737]

Location

Primary_assembly 2: 60,450,425-60,454,800 reverse strand.

Sscrofa11.1:CM000813.5

About this gene

This gene has 4 transcripts (splice variants) and 201 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000015158.5	USE1-201	851	273aa	ENSSSCP00000014752.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1UGC1 A0A8D1XB54	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSSSCT00000074959.2	USE1-202	2483	149aa	ENSSSCP00000067502.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QTM6	-
ENSSSCT00000075958.2	USE1-204	1221	155aa	ENSSSCP00000073730.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2RBL3	-
ENSSSCT00000091399.2	USE1-203	1206	150aa	ENSSSCP00000067439.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QRP2	-

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Breeds

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Genomic alignments

Gene tree

Orthologues

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data