Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: CALR ENSSSCG00000013746

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Description

calreticulin [Source:NCBI gene (formerly Entrezgene);Acc:100381266]

Gene Synonyms

CRP55, Calregulin, ERp60, HACBP

Location

Primary_assembly 2: 66,098,229-66,102,132 reverse strand.

Sscrofa11.1:CM000813.5

About this gene

This gene has 5 transcripts (splice variants), 198 orthologues and 4 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000015020.5	CALR-201	1893	417aa	ENSSSCP00000014615.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	P28491	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSSSCT00000097269.1	CALR-204	1822	383aa	ENSSSCP00000075337.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1T9R5 A0A8D0JRS8	-
ENSSSCT00000045310.2	CALR-202	1784	369aa	ENSSSCP00000049968.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1TBI0 A0A8D1NA52	-
ENSSSCT00000048882.3	CALR-203	1689	349aa	ENSSSCP00000042930.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287AG29	-
ENSSSCT00000098120.1	CALR-205	1258	378aa	ENSSSCP00000076110.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8W4F9P2	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,

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Breeds

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Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data