Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: SCAMP4 ENSSSCG00000013446

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Description

secretory carrier membrane protein 4 [Source:VGNC Symbol;Acc:VGNC:92608]

Location

Primary_assembly 2: 76,615,000-76,634,264 reverse strand.

Sscrofa11.1:CM000813.5

About this gene

This gene has 3 transcripts (splice variants), 197 orthologues and 4 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000014690.4	SCAMP4-202	2524	230aa	ENSSSCP00000014294.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1VU89 F1SDH4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSSSCT00000069267.1	SCAMP4-203	2422	196aa	ENSSSCP00000073325.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1VTN9 A0A5G2RAH0	-
ENSSSCT00000081770.1	SCAMP4-201	2416	230aa	ENSSSCP00000073151.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1VT62 A0A5G2REQ9	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

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Breeds

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Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data