Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
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Gene: MIDN ENSSSCG00000013432

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Description

midnolin [Source:VGNC Symbol;Acc:VGNC:90216]

Location

Primary_assembly 2: 77,204,017-77,211,671 reverse strand.

Sscrofa11.1:CM000813.5

About this gene

This gene has 2 transcripts (splice variants) and 256 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000014676.5	MIDN-201	3169	503aa	ENSSSCP00000014281.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1VUS3 F1S6Q6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSSSCT00000049144.3	MIDN-202	3040	460aa	ENSSSCP00000041113.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287ABE3 A0A4X1VUR3	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,

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Breeds

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Genomic alignments

Gene tree

Orthologues

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data