Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: PAX6 ENSSSCG00000013320

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Description

paired box 6 [Source:VGNC Symbol;Acc:VGNC:91195]

Location

Primary_assembly 2: 28,978,287-29,001,200 forward strand.

Sscrofa11.1:CM000813.5

About this gene

This gene has 3 transcripts (splice variants), 228 orthologues and 44 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000055747.3	PAX6-203	2512	441aa	ENSSSCP00000033621.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D0V8S9 A0A8D2C6L2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSSSCT00000014546.4	PAX6-201	2740	436aa	ENSSSCP00000014151.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D0V8R2 F2Z5M7	-
ENSSSCT00000054342.3	PAX6-202	2566	422aa	ENSSSCP00000040787.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1SWS9 A0A8D1F5F2	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

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Breeds

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Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data