hematopoietic cell-specific Lyn substrate 1 [Source:VGNC Symbol;Acc:VGNC:88801]
Primary_assembly 13: 138,855,144-138,889,281 forward strand.
Sscrofa11.1:CM000824.5
This gene has 8 transcripts (splice variants), 199 orthologues and 4 paralogues.
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | UniProt Match | Flags |
|---|---|---|---|---|---|---|---|
| ENSSSCT00000080954.2 | HCLS1-208 | 1572 | 524aa | ENSSSCP00000071142.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A5G2RI34 | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, |
| ENSSSCT00000062122.3 | HCLS1-203 | 2626 | 491aa | ENSSSCP00000049161.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A4X1T916 A0A8D0NBH4 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| ENSSSCT00000077487.2 | HCLS1-204 | 2590 | 479aa | ENSSSCP00000062860.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A5G2QF84 A0A8D1MFB9 | APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4, |
| ENSSSCT00000098398.1 | HCLS1-207 | 2527 | 458aa | ENSSSCP00000080237.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A8W4FM03 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| ENSSSCT00000081247.2 | HCLS1-205 | 2479 | 442aa | ENSSSCP00000071681.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A5G2R3L7 A0A8D1Z7P6 | - |
| ENSSSCT00000092024.1 | HCLS1-206 | 2476 | 441aa | ENSSSCP00000078891.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A8W4FKS0 | - |
| ENSSSCT00000065861.3 | HCLS1-202 | 1850 | 459aa | ENSSSCP00000051444.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A287B4N2 A0A8D0RN34 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
| ENSSSCT00000013000.5 | HCLS1-201 | 1548 | 515aa | ENSSSCP00000012658.4 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A4X1T921 F1SPE8 | APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, |
