Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Breeds
  - Gene tree
  - Orthologues
  - Paralogues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: WDR48 ENSSSCG00000011261

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Description

WD repeat domain 48 [Source:VGNC Symbol;Acc:VGNC:94925]

Location

Primary_assembly 13: 23,735,567-23,786,308 forward strand.

Sscrofa11.1:CM000824.5

About this gene

This gene has 6 transcripts (splice variants) and 229 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000085539.2	WDR48-203	4022	740aa	ENSSSCP00000068677.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2R3A9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSSSCT00000012329.5	WDR48-201	3990	733aa	ENSSSCP00000012007.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F2Z5V5	-
ENSSSCT00000073314.2	WDR48-204	3914	659aa	ENSSSCP00000062870.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QF95	-
ENSSSCT00000080680.2	WDR48-206	3891	684aa	ENSSSCP00000060275.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QDZ1	-
ENSSSCT00000065490.3	WDR48-205	3842	672aa	ENSSSCP00000054785.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287BFD4	-
ENSSSCT00000092840.1	WDR48-202	2174	675aa	ENSSSCP00000076489.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8W4FAZ1	-

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Breeds

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Genomic alignments

Gene tree

Orthologues

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data