Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: TOPORS ENSSSCG00000011004

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Description

TOP1 binding arginine/serine rich protein, E3 ubiquitin ligase [Source:VGNC Symbol;Acc:VGNC:95973]

Location

Primary_assembly 10: 33,865,959-33,879,070 forward strand.

Sscrofa11.1:CM000821.5

About this gene

This gene has 4 transcripts (splice variants), 250 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000038964.2	TOPORS-204	4792	1049aa	ENSSSCP00000045166.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287AMD1 A0A4X1UN45	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSSSCT00000012046.4	TOPORS-203	4130	979aa	ENSSSCP00000011738.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1UKW9 F1SE69	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSSSCT00000084509.2	TOPORS-202	4085	981aa	ENSSSCP00000067209.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QR37	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSSSCT00000022741.4	TOPORS-201	3990	979aa	ENSSSCP00000024398.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1UKW9 F1SE69	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

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Breeds

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Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data