Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
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Gene: SEC24C ENSSSCG00000010306

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Description

SEC24 homolog C, COPII coat complex component [Source:VGNC Symbol;Acc:VGNC:92678]

Location

Primary_assembly 14: 76,473,776-76,499,125 forward strand.

Sscrofa11.1:CM000825.5

About this gene

This gene has 3 transcripts (splice variants) and 47 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000011279.4	SEC24C-203	4542	1118aa	ENSSSCP00000010987.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D1MF20 F1SU53	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSSSCT00000039521.3	SEC24C-201	5176	1095aa	ENSSSCP00000033714.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A286ZQ28 A0A8D1MFU5	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSSSCT00000067504.2	SEC24C-202	4082	972aa	ENSSSCP00000072410.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2RK54 A0A8D1UC51	-

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Breeds

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Genomic alignments

Gene tree

Orthologues

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data