Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
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  - Orthologues
  - Paralogues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
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ID History
- Gene history

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Gene: UFD1 ENSSSCG00000010121

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Description

ubiquitin recognition factor in ER associated degradation 1 [Source:VGNC Symbol;Acc:VGNC:94683]

Location

Primary_assembly 14: 51,113,713-51,133,072 reverse strand.

Sscrofa11.1:CM000825.5

About this gene

This gene has 8 transcripts (splice variants) and 221 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000064766.2	UFD1-207	2061	338aa	ENSSSCP00000037707.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D0LUJ5 A0A8D0T264	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSSSCT00000094899.1	UFD1-203	5325	288aa	ENSSSCP00000076812.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8W4FBP1	-
ENSSSCT00000103967.1	UFD1-202	5256	265aa	ENSSSCP00000077875.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8W4FF56	-
ENSSSCT00000038807.3	UFD1-208	2036	307aa	ENSSSCP00000034237.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A286ZRI2 A0A8D1GVA7	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSSSCT00000051728.3	UFD1-204	1763	295aa	ENSSSCP00000034444.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A286ZS40	-
ENSSSCT00000011082.5	UFD1-205	1748	290aa	ENSSSCP00000010794.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1RK61	-
ENSSSCT00000080746.2	UFD1-206	1682	268aa	ENSSSCP00000067833.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2RB53	-
ENSSSCT00000085656.1	UFD1-201	1326	336aa	ENSSSCP00000061521.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QD53 A0A8D0LTN9	-

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Breeds

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Genomic alignments

Gene tree

Orthologues

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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