Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Breeds
  - Gene tree
  - Orthologues
  - Paralogues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: HMBOX1 ENSSSCG00000009682

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Description

homeobox containing 1 [Source:VGNC Symbol;Acc:VGNC:88898]

Location

Primary_assembly 14: 12,692,588-12,882,558 forward strand.

Sscrofa11.1:CM000825.5

About this gene

This gene has 3 transcripts (splice variants) and 278 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000010617.5	HMBOX1-202	2466	420aa	ENSSSCP00000010341.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D0I1B5 F1RJQ0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSSSCT00000059777.3	HMBOX1-201	4054	405aa	ENSSSCP00000045173.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287AMR0	-
ENSSSCT00000010616.4	HMBOX1-203	2267	383aa	ENSSSCP00000010340.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D1CM46 F1RJQ1	-

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Breeds

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Genomic alignments

Gene tree

Orthologues

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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