Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: PDLIM2 ENSSSCG00000009625

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Description

PDZ and LIM domain 2 [Source:VGNC Symbol;Acc:VGNC:91282]

Location

Primary_assembly 14: 6,834,779-6,848,526 forward strand.

Sscrofa11.1:CM000825.5

About this gene

This gene has 2 transcripts (splice variants), 198 orthologues and 8 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000010551.5	PDLIM2-202	1760	353aa	ENSSSCP00000010275.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D1S2M8 A0A8D2BY25	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSSSCT00000051092.2	PDLIM2-201	1133	279aa	ENSSSCP00000033906.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D0J9I3 A0A8D0PRG9	-

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Breeds

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Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data