Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: PSPC1 ENSSSCG00000009569

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Description

paraspeckle component 1 [Source:VGNC Symbol;Acc:VGNC:91930]

Location

Primary_assembly 11: 482,564-572,090 reverse strand.

Sscrofa11.1:CM000822.5

About this gene

This gene has 4 transcripts (splice variants), 207 orthologues and 6 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000057535.2	PSPC1-202	2028	521aa	ENSSSCP00000032237.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A286ZKW2 A0A4X1U1M1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSSSCT00000106693.1	PSPC1-201	7254	391aa	ENSSSCP00000077432.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D0WR24 A0A8W4FEZ2	-
ENSSSCT00000077634.1	PSPC1-203	1947	494aa	ENSSSCP00000063189.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QYA0 A0A8D1C7H0	-
ENSSSCT00000010490.5	PSPC1-204	1610	492aa	ENSSSCP00000010218.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1RN28	-

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Breeds

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Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data