Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: LIG4 ENSSSCG00000009540

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Description

DNA ligase 4 [Source:VGNC Symbol;Acc:VGNC:89722]

Location

Primary_assembly 11: 75,537,036-75,547,716 reverse strand.

Sscrofa11.1:CM000822.5

About this gene

This gene has 3 transcripts (splice variants), 194 orthologues and 2 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000010458.5	LIG4-203	5056	910aa	ENSSSCP00000010186.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D1Q102 F1RLP1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSSSCT00000094608.1	LIG4-201	4810	910aa	ENSSSCP00000076235.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D1Q102 F1RLP1	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSSSCT00000101994.1	LIG4-202	3938	910aa	ENSSSCP00000076545.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D1Q102 F1RLP1	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

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Breeds

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Gene tree

Orthologues

Paralogues

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data