Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: SUPT20H ENSSSCG00000009359

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Description

SPT20 homolog, SAGA complex component [Source:UniProtKB Gene Name;Acc:A0A286ZJT3]

Location

Primary_assembly 11: 12,825,762-12,864,929 reverse strand.

Sscrofa11.1:CM000822.5

About this gene

This gene has 7 transcripts (splice variants), 210 orthologues and 3 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000052734.1	SUPT20H-204	3088	811aa	ENSSSCP00000034551.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A286ZSW0 A0A8D0MID7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSSSCT00000095518.1	SUPT20H-202	2991	779aa	ENSSSCP00000078277.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D0SGM4 A0A8W4FG33	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSSSCT00000040086.3	SUPT20H-206	2944	804aa	ENSSSCP00000042095.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287ADP2	-
ENSSSCT00000037044.2	SUPT20H-207	2898	767aa	ENSSSCP00000044014.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287AJF1 A0A4X1T3C6	-
ENSSSCT00000060979.3	SUPT20H-201	2869	723aa	ENSSSCP00000035347.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D0TUI1 A0A8D1Y8S8	-
ENSSSCT00000053123.3	SUPT20H-205	2724	685aa	ENSSSCP00000031720.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A286ZJT3 A0A8D0M2Q3	-
ENSSSCT00000010256.4	SUPT20H-203	2704	709aa	ENSSSCP00000009989.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D0M392 A0A8D0WKC0	-

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Breeds

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Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data