Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Breeds
  - Gene tree
  - Orthologues
  - Paralogues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: ENSSSCG00000008898

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Description

HOP homeobox [Source:VGNC Symbol;Acc:VGNC:88932]

Location

Primary_assembly 8: 55,862,197-55,901,633 reverse strand.

Sscrofa11.1:CM000819.5

About this gene

This gene has 3 transcripts (splice variants) and 164 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000042235.3	-	1512	236aa	ENSSSCP00000049629.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287B0F0 A0A4X1TV84	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSSSCT00000063895.3	-	1179	73aa	ENSSSCP00000032389.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8MJD6	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSSSCT00000044723.3	-	1169	147aa	ENSSSCP00000048319.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287AWK6 A0A4X1TV56	-

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Breeds

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Genomic alignments

Gene tree

Orthologues

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data