Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
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- Gene gain/loss tree
- Orthologues
- Paralogues
- Breeds
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Ontologies
- GO: Anatomical entity
Phenotypes
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Molecular interactions
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ID History
- Gene history

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Gene: NAF1 ENSSSCG00000008887

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Description

nuclear assembly factor 1 ribonucleoprotein [Source:VGNC Symbol;Acc:VGNC:90568]

Location

Primary_assembly 8: 51,968,483-52,012,927 reverse strand.

Sscrofa11.1:CM000819.5

About this gene

This gene has 3 transcripts (splice variants) and 189 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000084672.2	NAF1-203	5289	500aa	ENSSSCP00000065698.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QM69	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSSSCT00000094371.1	NAF1-202	4964	433aa	ENSSSCP00000077195.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8W4FD51	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSSSCT00000086807.2	NAF1-201	1802	434aa	ENSSSCP00000066189.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QND4 A0A8D1M5Z9	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Breeds

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Genomic alignments

Gene tree

Orthologues

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data