Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Breeds
  - Gene tree
  - Orthologues
  - Paralogues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: VPS16 ENSSSCG00000007167

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Description

VPS16 core subunit of CORVET and HOPS complexes [Source:VGNC Symbol;Acc:VGNC:95621]

Location

Primary_assembly 17: 32,803,412-32,825,933 reverse strand.

Sscrofa11.1:CM000828.5

About this gene

This gene has 6 transcripts (splice variants) and 198 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000007840.5	VPS16-204	3138	815aa	ENSSSCP00000007629.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D0U823 F1S8A3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSSSCT00000081840.2	VPS16-201	2628	766aa	ENSSSCP00000068699.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2RDC2	-
ENSSSCT00000043153.2	VPS16-206	2599	803aa	ENSSSCP00000053579.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287BB69 A0A4X1SH02	-
ENSSSCT00000062960.2	VPS16-205	2578	795aa	ENSSSCP00000040496.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287A9L5 A0A4X1SGX6	-
ENSSSCT00000086479.1	VPS16-203	2464	700aa	ENSSSCP00000074569.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1SHY7 A0A5G2RHC6	-
ENSSSCT00000096638.1	VPS16-202	2428	688aa	ENSSSCP00000079308.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8W4FLX9	-

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Breeds

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Genomic alignments

Gene tree

Orthologues

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data