Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Breeds
  - Gene tree
  - Orthologues
  - Paralogues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: CSDE1 ENSSSCG00000006752

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Description

cold shock domain containing E1 [Source:VGNC Symbol;Acc:VGNC:87029]

Location

Primary_assembly 4: 105,804,587-105,845,733 forward strand.

Sscrofa11.1:CM000815.5

About this gene

This gene has 3 transcripts (splice variants) and 243 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000064093.3	CSDE1-203	4281	844aa	ENSSSCP00000050736.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287B2T9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSSSCT00000044302.3	CSDE1-202	4222	827aa	ENSSSCP00000057604.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287BM79	-
ENSSSCT00000048448.3	CSDE1-201	3522	791aa	ENSSSCP00000053136.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287B9X6	-

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Breeds

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Genomic alignments

Gene tree

Orthologues

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data