Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: PGLYRP4 ENSSSCG00000006587

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Description

peptidoglycan recognition protein 4 [Source:NCBI gene (formerly Entrezgene);Acc:396556]

Gene Synonyms

PPGRP-S

Location

Primary_assembly 4: 96,243,118-96,261,495 forward strand.

Sscrofa11.1:CM000815.5

About this gene

This gene has 4 transcripts (splice variants), 91 orthologues and 3 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000007216.4	PGLYRP4-201	2036	392aa	ENSSSCP00000007022.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1SFU8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSSSCT00000059284.2	PGLYRP4-202	4742	374aa	ENSSSCP00000058950.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287BR76	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSSSCT00000075234.2	PGLYRP4-203	4439	372aa	ENSSSCP00000065953.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QVH6	-
ENSSSCT00000076371.1	PGLYRP4-204	614	119aa	ENSSSCP00000073603.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2R8K6	-

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Breeds

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Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data