Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: UBAP2L ENSSSCG00000006553

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Description

ubiquitin associated protein 2 like [Source:VGNC Symbol;Acc:VGNC:94635]

Location

Primary_assembly 4: 95,471,126-95,520,425 reverse strand.

Sscrofa11.1:CM000815.5

About this gene

This gene has 7 transcripts (splice variants), 210 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000047263.3	UBAP2L-206	4889	1137aa	ENSSSCP00000037188.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287A0B3 A0A4X1W297	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSSSCT00000044373.3	UBAP2L-207	4850	1124aa	ENSSSCP00000032095.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A286ZKU8 A0A4X1VV80	-
ENSSSCT00000027198.4	UBAP2L-205	4223	1087aa	ENSSSCP00000026261.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D1W5B3 I3LQ83	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSSSCT00000007178.4	UBAP2L-204	3667	1088aa	ENSSSCP00000006985.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1VZT9 F1RGK9	-
ENSSSCT00000047273.2	UBAP2L-201	3580	896aa	ENSSSCP00000059149.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287BRL3 A0A8D1J8G3	-
ENSSSCT00000028059.4	UBAP2L-202	3564	998aa	ENSSSCP00000019226.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	I3L5C7	-
ENSSSCT00000090271.2	UBAP2L-203	3394	976aa	ENSSSCP00000060005.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QD79	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,

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Breeds

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Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data