Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: ATF6 ENSSSCG00000006346

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Description

activating transcription factor 6 [Source:VGNC Symbol;Acc:VGNC:85609]

Location

Primary_assembly 4: 88,591,288-88,805,304 reverse strand.

Sscrofa11.1:CM000815.5

About this gene

This gene has 4 transcripts (splice variants), 217 orthologues and 10 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000088090.2	ATF6-204	7511	688aa	ENSSSCP00000060683.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2Q9P8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSSSCT00000090069.2	ATF6-203	6777	467aa	ENSSSCP00000071499.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2R5A4	-
ENSSSCT00000006954.5	ATF6-202	6072	603aa	ENSSSCP00000006765.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D1BAD7 F1S1C8	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSSSCT00000086014.1	ATF6-201	5073	595aa	ENSSSCP00000062851.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QXC7 A0A8D1D5B9	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Breeds

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Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data