Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: LYN ENSSSCG00000006250

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Description

LYN proto-onco, Src family tyrosine kinase [Source:VGNC Symbol;Acc:VGNC:89910]

Location

Primary_assembly 4: 75,793,492-75,903,496 reverse strand.

Sscrofa11.1:CM000815.5

About this gene

This gene has 4 transcripts (splice variants), 203 orthologues and 32 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000006849.5	LYN-202	5001	512aa	ENSSSCP00000006663.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D1DVN9 F1RT53	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSSSCT00000063510.3	LYN-201	5041	487aa	ENSSSCP00000034256.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A286ZS09	-
ENSSSCT00000064687.3	LYN-203	3032	491aa	ENSSSCP00000032884.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A286ZMM8 A0A8D1C944	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSSSCT00000064860.3	LYN-204	1819	458aa	ENSSSCP00000049674.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287AZU5 A0A8D1CUR9	-

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Breeds

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Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data