Gene: SDC2 ENSSSCG00000006088

Description

syndecan 2 [Source:NCBI gene (formerly Entrezgene);Acc:100152754]

Gene Synonyms

syndecan-2

Location

Primary_assembly 4: 40,001,395-40,129,697 reverse strand.

Sscrofa11.1:CM000815.5

About this gene

This gene has 4 transcripts (splice variants), 273 orthologues and 3 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000006679.4	SDC2-201	2089	202aa	ENSSSCP00000006499.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1U283 F1S0L5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSSSCT00000075685.2	SDC2-202	3019	186aa	ENSSSCP00000066186.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QQ46	-
ENSSSCT00000096568.1	SDC2-204	2959	166aa	ENSSSCP00000080512.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D1P5D8 A0A8W4FLZ4	-
ENSSSCT00000077718.2	SDC2-203	988	202aa	ENSSSCP00000070709.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1U283 F1S0L5	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

Breeds

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

Gene: SDC2 ENSSSCG00000006088

Breeds

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Gene: SDC2 ENSSSCG00000006088

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