Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Breeds
  - Gene tree
  - Orthologues
  - Paralogues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: LRSAM1 ENSSSCG00000005613

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Description

leucine rich repeat and sterile alpha motif containing 1 [Source:VGNC Symbol;Acc:VGNC:89864]

Location

Primary_assembly 1: 267,964,928-268,008,825 forward strand.

Sscrofa11.1:CM000812.5

About this gene

This gene has 5 transcripts (splice variants) and 190 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000006172.4	LRSAM1-202	3065	737aa	ENSSSCP00000006013.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1RS16	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSSSCT00000096266.1	LRSAM1-203	2996	708aa	ENSSSCP00000076074.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8W4FCP2	-
ENSSSCT00000030046.3	LRSAM1-205	2975	696aa	ENSSSCP00000019700.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D2C242 I3L6P8	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSSSCT00000099871.1	LRSAM1-204	2942	690aa	ENSSSCP00000080150.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8W4FPC0	-
ENSSSCT00000097838.1	LRSAM1-201	2674	704aa	ENSSSCP00000075753.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8W4F8Z7	-

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Breeds

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Genomic alignments

Gene tree

Orthologues

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data