Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: LHX6 ENSSSCG00000005530

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Description

LIM homeobox 6 [Source:VGNC Symbol;Acc:VGNC:89716]

Location

Primary_assembly 1: 262,295,353-262,322,530 reverse strand.

Sscrofa11.1:CM000812.5

About this gene

This gene has 6 transcripts (splice variants), 271 orthologues and 20 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000073213.2	LHX6-202	3547	392aa	ENSSSCP00000062351.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QCN8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSSSCT00000076807.2	LHX6-201	5643	363aa	ENSSSCP00000072995.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2R7E1 A0A8D1X8F7	-
ENSSSCT00000078868.2	LHX6-203	3509	368aa	ENSSSCP00000062750.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QX35	-
ENSSSCT00000079228.2	LHX6-204	3003	176aa	ENSSSCP00000072147.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2RCX4 A0A8D1JBY4	-
ENSSSCT00000080673.2	LHX6-206	2315	377aa	ENSSSCP00000064116.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2R0U4	-
ENSSSCT00000006081.5	LHX6-205	2102	366aa	ENSSSCP00000005926.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1UM24 F1SLQ9	-

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Breeds

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Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data