Gene: TJP1 ENSSSCG00000004854

Description

tight junction protein 1 [Source:VGNC Symbol;Acc:VGNC:94005]

Location

Primary_assembly 1: 144,930,370-145,195,836 reverse strand.

Sscrofa11.1:CM000812.5

About this gene

This gene has 5 transcripts (splice variants), 285 orthologues and 3 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000051548.3	TJP1-205	7081	1862aa	ENSSSCP00000054972.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287BF71	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSSSCT00000063278.3	TJP1-203	7111	1749aa	ENSSSCP00000034183.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A286ZRD4	-
ENSSSCT00000057241.3	TJP1-204	6939	1689aa	ENSSSCP00000043392.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287AHM9	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSSSCT00000005359.4	TJP1-202	6700	1752aa	ENSSSCP00000005227.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1SNQ1	-
ENSSSCT00000024292.4	TJP1-201	6105	1702aa	ENSSSCP00000019275.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	I3L5H6	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Breeds

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

Gene: TJP1 ENSSSCG00000004854

Breeds

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Gene: TJP1 ENSSSCG00000004854

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