Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Breeds
  - Gene tree
  - Orthologues
  - Paralogues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: C18orf54 ENSSSCG00000004531

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Description

chromosome 1 C18orf54 homolog [Source:VGNC Symbol;Acc:VGNC:85965]

Location

Primary_assembly 1: 103,861,246-103,887,284 forward strand.

Sscrofa11.1:CM000812.5

About this gene

This gene has 3 transcripts (splice variants) and 157 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000054889.2	C18orf54-203	5726	531aa	ENSSSCP00000058114.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A480MY39 A0A4X1UB66	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSSSCT00000005005.5	C18orf54-202	2810	519aa	ENSSSCP00000004885.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D2CCX9 F1S1Z5	-
ENSSSCT00000043978.3	C18orf54-201	2407	523aa	ENSSSCP00000052563.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287B8C7	-

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Breeds

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Genomic alignments

Gene tree

Orthologues

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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