Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
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- Gene gain/loss tree
- Orthologues
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Ontologies
- GO: Anatomical entity
Phenotypes
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ID History
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Gene: RNF146 ENSSSCG00000004217

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Description

ring finger protein 146 [Source:VGNC Symbol;Acc:VGNC:92361]

Location

Primary_assembly 1: 35,909,575-35,926,968 reverse strand.

Sscrofa11.1:CM000812.5

About this gene

This gene has 3 transcripts (splice variants) and 272 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000043530.2	RNF146-203	5121	369aa	ENSSSCP00000056492.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1UCX5 A0A8D0XAC2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSSSCT00000058349.3	RNF146-201	2171	360aa	ENSSSCP00000054287.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287BDW7 A0A8D1FI97	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSSSCT00000004660.4	RNF146-202	2075	359aa	ENSSSCP00000004553.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1UFF0 F1S2X2	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

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Breeds

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Genomic alignments

Gene tree

Orthologues

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data