Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: PRKN ENSSSCG00000004032

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Description

parkin RBR E3 ubiquitin protein ligase [Source:NCBI gene (formerly Entrezgene);Acc:733673]

Gene Synonyms

PARK2, pdr-1

Location

Primary_assembly 1: 5,465,312-6,730,872 forward strand.

Sscrofa11.1:CM000812.5

About this gene

This gene has 4 transcripts (splice variants), 221 orthologues and 9 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000070113.2	PRKN-203	2611	461aa	ENSSSCP00000061874.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D1HIV3 Q1WDP3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSSSCT00000075359.2	PRKN-204	2527	433aa	ENSSSCP00000067923.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2RBE0 A0A8D1HIY8	-
ENSSSCT00000004459.5	PRKN-201	2256	409aa	ENSSSCP00000004358.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D2C8B1 F1SBW0	-
ENSSSCT00000069514.2	PRKN-202	2176	316aa	ENSSSCP00000074494.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2RH78 A0A8D1HER1	-

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Breeds

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Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data