Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Breeds
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  - Orthologues
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Ontologies
- GO: Anatomical entity
Phenotypes
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Molecular interactions
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ID History
- Gene history

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Gene: CASZ1 ENSSSCG00000003407

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Description

castor zinc finger 1 [Source:VGNC Symbol;Acc:VGNC:86207]

Location

Primary_assembly 6: 70,878,983-70,933,357 reverse strand.

Sscrofa11.1:CM000817.5

About this gene

This gene has 3 transcripts (splice variants) and 209 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000038788.3	CASZ1-201	5304	1767aa	ENSSSCP00000033737.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A286ZQI9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSSSCT00000061720.3	CASZ1-203	6310	1761aa	ENSSSCP00000036152.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A286ZXG3	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSSSCT00000003780.5	CASZ1-202	6239	1745aa	ENSSSCP00000003693.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D1ESJ0 F1RHS4	-

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Breeds

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Genomic alignments

Gene tree

Orthologues

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data