Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: CLPTM1 ENSSSCG00000003085

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Description

CLPTM1 regulator of GABA type A receptor forward trafficking [Source:VGNC Symbol;Acc:VGNC:86778]

Location

Primary_assembly 6: 51,413,602-51,441,816 forward strand.

Sscrofa11.1:CM000817.5

About this gene

This gene has 3 transcripts (splice variants), 194 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000059938.3	CLPTM1-202	2285	701aa	ENSSSCP00000036537.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A286ZY44	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSSSCT00000003423.5	CLPTM1-201	1890	629aa	ENSSSCP00000003340.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1RM47	-
ENSSSCT00000070878.1	CLPTM1-203	1866	621aa	ENSSSCP00000061483.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QHL1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Breeds

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Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data