Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: TRIM39 ENSSSCG00000001342

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Description

tripartite motif containing 39 [Source:NCBI gene (formerly Entrezgene);Acc:100151742]

Location

Primary_assembly 7: 23,047,148-23,062,972 forward strand.

Sscrofa11.1:CM000818.5

About this gene

This gene has 3 transcripts (splice variants), 125 orthologues and 75 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000107579.1	TRIM39-203	4911	488aa	ENSSSCP00000081967.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D0XWX9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSSSCT00000107569.1	TRIM39-201	3290	488aa	ENSSSCP00000081960.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D0XWX9	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSSSCT00000086539.3	TRIM39-202	3030	488aa	ENSSSCP00000066831.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D0XWX9 I7FTT9	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

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Breeds

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Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data