Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: TRIM40 ENSSSCG00000001236

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Description

tripartite motif containing 40 [Source:VGNC Symbol;Acc:VGNC:94413]

Location

Primary_assembly 7: 22,702,925-22,717,511 forward strand.

Sscrofa11.1:CM000818.5

About this gene

This gene has 7 transcripts (splice variants), 76 orthologues and 75 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000051045.3	TRIM40-205	2580	310aa	ENSSSCP00000049692.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8X9AES0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSSSCT00000098693.2	TRIM40-202	2261	241aa	ENSSSCP00000076910.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8W4FC63	-
ENSSSCT00000033688.5	TRIM40-204	1780	310aa	ENSSSCP00000028552.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1RZ46	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSSSCT00000107555.1	TRIM40-206	1682	241aa	ENSSSCP00000081946.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSSSCT00000107556.1	TRIM40-207	1187	276aa	ENSSSCP00000081947.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSSSCT00000107553.1	TRIM40-201	1123	98aa	ENSSSCP00000081945.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSSSCT00000107554.1	TRIM40-203	3891	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined	-	-

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Breeds

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Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data