Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

Configure this page

Export data

Share this page

Bookmark this page

.

Gene: PACSIN2 ENSSSCG00000000036

.

Description

protein kinase C and casein kinase substrate in neurons 2 [Source:VGNC Symbol;Acc:VGNC:91143]

Location

Primary_assembly 5: 5,853,377-5,985,169 forward strand.

Sscrofa11.1:CM000816.5

About this gene

This gene has 4 transcripts (splice variants), 205 orthologues and 2 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000058272.2	PACSIN2-204	3171	538aa	ENSSSCP00000037679.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287A178 A0A8D1S195	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSSSCT00000000038.5	PACSIN2-203	3789	497aa	ENSSSCP00000000038.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D1GXZ5 F1SJR5	-
ENSSSCT00000063611.3	PACSIN2-202	3472	486aa	ENSSSCP00000057219.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A480MPL1 A0A8D1GXD5	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSSSCT00000065730.3	PACSIN2-201	3269	445aa	ENSSSCP00000058915.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287BR41 A0A8D1H0M5	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

.

Breeds

.

Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

.

Personal Data