Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Breeds
  - Gene tree
  - Orthologues
  - Paralogues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
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ID History
- Gene history

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Gene: NLE1 ENSSSCG00000025796

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Description

notchless homolog 1 [Source:VGNC Symbol;Acc:VGNC:90776]

Location

Primary_assembly 12: 40,035,547-40,044,397 forward strand.

Sscrofa11.1:CM000823.5

About this gene

This gene has 5 transcripts (splice variants) and 199 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000026878.4	NLE1-201	1830	485aa	ENSSSCP00000027429.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	I3LTI2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSSSCT00000071703.1	NLE1-205	2526	484aa	ENSSSCP00000071012.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2RHV3 A0A8D1RVU6	-
ENSSSCT00000069402.2	NLE1-204	2400	434aa	ENSSSCP00000070692.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2R2X4	-
ENSSSCT00000051271.3	NLE1-203	2391	431aa	ENSSSCP00000041707.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287ACH7	-
ENSSSCT00000057432.3	NLE1-202	1686	437aa	ENSSSCP00000040260.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287A8X1	-

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Breeds

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Genomic alignments

Gene tree

Orthologues

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data