Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: CARM1 ENSSSCG00000013633

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Description

coactivator associated arginine methyltransferase 1 [Source:VGNC Symbol;Acc:VGNC:86191]

Location

Primary_assembly 2: 69,602,136-69,644,854 forward strand.

Sscrofa11.1:CM000813.5

About this gene

This gene has 4 transcripts (splice variants), 215 orthologues and 8 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000082893.2	CARM1-202	3571	643aa	ENSSSCP00000068390.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QW64	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSSSCT00000066666.2	CARM1-203	3481	613aa	ENSSSCP00000068370.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QW44	-
ENSSSCT00000014888.5	CARM1-201	3154	608aa	ENSSSCP00000014487.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A4X1VCC3 F1S590	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSSSCT00000062049.3	CARM1-204	3098	585aa	ENSSSCP00000032445.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A286ZLV5 A0A4X1VHJ4	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Breeds

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Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data