Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
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- Gene gain/loss tree
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Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
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Molecular interactions
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ID History
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Gene: NOL10 ENSSSCG00000008635

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Description

nucleolar protein 10 [Source:VGNC Symbol;Acc:VGNC:90813]

Location

Primary_assembly 3: 125,861,432-125,956,887 forward strand.

Sscrofa11.1:CM000814.5

About this gene

This gene has 5 transcripts (splice variants) and 198 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000061079.3	NOL10-203	3042	675aa	ENSSSCP00000033617.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A286ZQ67	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSSSCT00000089153.1	NOL10-201	2990	630aa	ENSSSCP00000068300.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QVX6 A0A8D1I5M1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSSSCT00000009447.5	NOL10-204	2964	649aa	ENSSSCP00000009204.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1SAA1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSSSCT00000085342.2	NOL10-205	2892	625aa	ENSSSCP00000061271.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QA80	-
ENSSSCT00000061396.3	NOL10-202	2746	675aa	ENSSSCP00000041811.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287ADA0 A0A8D2BPY7	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Breeds

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Genomic alignments

Gene tree

Orthologues

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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