Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: HNF4A ENSSSCG00000007371

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Description

hepatocyte nuclear factor 4 alpha [Source:VGNC Symbol;Acc:VGNC:96348]

Location

Primary_assembly 17: 46,783,777-46,847,500 forward strand.

Sscrofa11.1:CM000828.5

About this gene

This gene has 5 transcripts (splice variants), 235 orthologues and 11 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000008067.5	HNF4A-203	4687	484aa	ENSSSCP00000007852.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A288CG37 A0A8D1JH95	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSSSCT00000066879.1	HNF4A-202	4627	433aa	ENSSSCP00000061046.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QAK8 A0A8D0WMS3	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSSSCT00000064302.1	HNF4A-205	4523	452aa	ENSSSCP00000050605.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287B2X7 A0A8D1SSK3	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSSSCT00000081824.2	HNF4A-204	1290	398aa	ENSSSCP00000069362.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2REN7	-
ENSSSCT00000067664.2	HNF4A-201	1277	420aa	ENSSSCP00000067518.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QTN9	-

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Breeds

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Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data