Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Breeds
  - Gene tree
  - Orthologues
  - Paralogues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: CLN6 ENSSSCG00000004957

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Description

CLN6 transmembrane ER protein [Source:VGNC Symbol;Acc:VGNC:86771]

Location

Primary_assembly 1: 166,107,228-166,126,808 reverse strand.

Sscrofa11.1:CM000812.5

About this gene

This gene has 8 transcripts (splice variants) and 191 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000005469.5	CLN6-202	2188	312aa	ENSSSCP00000005332.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8D1UE01 F1SJH5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSSSCT00000065948.3	CLN6-208	2286	246aa	ENSSSCP00000039873.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A480ZG85	-
ENSSSCT00000047979.2	CLN6-207	2248	159aa	ENSSSCP00000041341.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A287AC05 A0A8D1C9L4	-
ENSSSCT00000080326.2	CLN6-203	2182	310aa	ENSSSCP00000060772.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2Q928 A0A8D1GK99	-
ENSSSCT00000078989.2	CLN6-204	2089	279aa	ENSSSCP00000068163.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QTK1 A0A8D1DZ67	-
ENSSSCT00000088985.2	CLN6-205	1999	249aa	ENSSSCP00000068805.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QXD4 A0A8D2CEU5	-
ENSSSCT00000079797.2	CLN6-201	1988	257aa	ENSSSCP00000067425.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2R9Z0	-
ENSSSCT00000082052.2	CLN6-206	1900	216aa	ENSSSCP00000064936.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QJG0 A0A8D1AF50	-

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Breeds

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Genomic alignments

Gene tree

Orthologues

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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