Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: HIF3A ENSSSCG00000003101

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Description

hypoxia inducible factor 3 subunit alpha [Source:VGNC Symbol;Acc:VGNC:88881]

Location

Primary_assembly 6: 52,342,885-52,373,058 forward strand.

Sscrofa11.1:CM000817.5

About this gene

This gene has 4 transcripts (splice variants), 189 orthologues and 7 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSSSCT00000003440.5	HIF3A-201	1996	643aa	ENSSSCP00000003357.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1RM22	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSSSCT00000096815.1	HIF3A-204	1725	574aa	ENSSSCP00000081148.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8W4FPM1	-
ENSSSCT00000081886.2	HIF3A-202	1668	556aa	ENSSSCP00000069039.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5G2QVQ4	-
ENSSSCT00000094588.1	HIF3A-203	1278	426aa	ENSSSCP00000079472.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8W4FKN9	-

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Breeds

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Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data