Transcript: ENSRNOT00000080253.3 Spg11-201

Description

SPG11 vesicle trafficking associated, spatacsin [Source:RGD Symbol;Acc:1562529]

Gene Synonyms

LOC311372, RGD1562529

Location

About this transcript

This transcript has 40 exons, is annotated with 19 domains and features, is associated with 233 variant alleles and maps to 358 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000080253.3	Spg11-201	7948	2465aa	ENSRNOP00000071131.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0G2JZP7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000097776.2	Spg11-202	7488	2374aa	ENSRNOP00000081282.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6G5Q3	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Summary

Statistics

Exons: 40, Coding exons: 40, Transcript length: 7,948 bps, Translation length: 2,465 residues

Version

ENSRNOT00000080253.3

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.