Transcript: ENSRNOT00000022387.7 Pdlim5-201

Description

PDZ and LIM domain 5 [Source:RGD Symbol;Acc:621076]

Gene Synonyms

Enh, Enh1

Location

Primary_assembly 2: 233,628,503-233,793,476 reverse strand.

About this transcript

This transcript has 15 exons, is annotated with 40 domains and features, is associated with 313 variant alleles and maps to 185 oligo probes.

Gene

This transcript is a product of gene ENSRNOG00000016419.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000097256.2	Pdlim5-203	2263	723aa	ENSRNOP00000091194.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6ADM7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000095015.2	Pdlim5-202	2143	683aa	ENSRNOP00000082394.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6G7D0	-
ENSRNOT00000114385.2	Pdlim5-206	2011	639aa	ENSRNOP00000093276.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6GKL2	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSRNOT00000022387.7	Pdlim5-201	1951	619aa	ENSRNOP00000022387.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8L2QCL7	-
ENSRNOT00000115118.2	Pdlim5-207	1672	526aa	ENSRNOP00000097787.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6ARU2	-
ENSRNOT00000109323.2	Pdlim5-205	1655	337aa	ENSRNOP00000091918.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6GJC1	-
ENSRNOT00000115772.2	Pdlim5-208	1361	239aa	ENSRNOP00000091892.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6GJY3	-
ENSRNOT00000106810.2	Pdlim5-204	1286	214aa	ENSRNOP00000094742.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6B1G1	-

Summary

Statistics

Exons: 15, Coding exons: 14, Transcript length: 1,951 bps, Translation length: 619 residues

Version

ENSRNOT00000022387.7

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

Transcript: ENSRNOT00000022387.7 Pdlim5-201

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Transcript: ENSRNOT00000022387.7 Pdlim5-201

Summary

About Us

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