Transcript: ENSRNOT00000078102.3 Runx1t1-202

Description

RUNX1 partner transcriptional co-repressor 1 [Source:RGD Symbol;Acc:1305490]

Gene Synonyms

Cbfa2t1, LOC362489

Location

Primary_assembly 5: 31,992,560-32,132,855 forward strand.

About this transcript

This transcript has 11 exons, is annotated with 47 domains and features, is associated with 608 variant alleles and maps to 269 oligo probes.

Gene

This transcript is a product of gene ENSRNOG00000005673.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000078102.3	Runx1t1-202	3537	686aa	ENSRNOP00000071431.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0G2K0G0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSRNOT00000066191.3	Runx1t1-201	3364	577aa	ENSRNOP00000063830.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A6II90 D3ZWZ8	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSRNOT00000094571.2	Runx1t1-203	3291	604aa	ENSRNOP00000090913.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AB42	-
ENSRNOT00000111262.2	Runx1t1-204	3231	584aa	ENSRNOP00000081192.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6G5L4	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSRNOT00000148662.1	Runx1t1-205	3176	617aa	ENSRNOP00000100335.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-

Summary

Statistics

Exons: 11, Coding exons: 11, Transcript length: 3,537 bps, Translation length: 686 residues

Version

ENSRNOT00000078102.3

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

Transcript: ENSRNOT00000078102.3 Runx1t1-202

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Transcript: ENSRNOT00000078102.3 Runx1t1-202

Summary

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