Transcript: ENSRNOT00000004058.10 Smg6-201

Description

SMG6 nonsense mediated mRNA decay factor [Source:RGD Symbol;Acc:1595918]

Gene Synonyms

LOC287522, LOC303309, LRRGT00040, RGD1309609

Location

About this transcript

This transcript has 19 exons, is annotated with 37 domains and features, is associated with 321 variant alleles and maps to 263 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000004058.10	Smg6-201	6337	1472aa	ENSRNOP00000004058.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A6HGP2 D4A589	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSRNOT00000155416.1	Smg6-204	6013	1364aa	ENSRNOP00000108629.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000153551.1	Smg6-203	4435	1419aa	ENSRNOP00000110705.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000052412.3	Smg6-202	498	165aa	ENSRNOP00000077710.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6TXF9	-

Summary

Statistics

Exons: 19, Coding exons: 19, Transcript length: 6,337 bps, Translation length: 1,472 residues

Version

ENSRNOT00000004058.10

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.