Transcript: ENSRNOT00000003572.5 Ciita-201

Description

class II, major histocompatibility complex, transactivator [Source:RGD Symbol;Acc:619813]

Gene Synonyms

C2ta, Mhc2ta

Location

About this transcript

This transcript has 19 exons, is annotated with 39 domains and features, is associated with 210 variant alleles and maps to 249 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000003572.5	Ciita-201	5304	1156aa	ENSRNOP00000003572.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	G3V6C0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000085310.3	Ciita-202	5076	1073aa	ENSRNOP00000075087.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0G2K9Q5 A6K4J5	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,

Summary

Statistics

Exons: 19, Coding exons: 18, Transcript length: 5,304 bps, Translation length: 1,156 residues

Version

ENSRNOT00000003572.5

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.