Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: Prpf40b ENSRNOG00000052539

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Description

pre-mRNA processing factor 40 homolog B [Source:RGD Symbol;Acc:1565411]

Gene Synonyms

LOC103692979, LOC363000, RGD1565411

Location

Primary_assembly 7: 132,310,927-132,332,912 forward strand.

GRCr8:CM070397.1

About this gene

This gene has 4 transcripts (splice variants), 114 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000136576.1	Prpf40b-204	3452	930aa	ENSRNOP00000112311.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSRNOT00000113677.2	Prpf40b-202	3352	890aa	ENSRNOP00000080666.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZQT3	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000113722.2	Prpf40b-203	3282	863aa	ENSRNOP00000094837.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6ALK3	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000091306.3	Prpf40b-201	3079	849aa	ENSRNOP00000071841.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1LTJ8	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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